PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.196810.1
Common NameCsa_1G004870, LOC101206846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 121aa    MW: 13969.7 Da    PI: 9.8273
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.196810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-09651021955
                     HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     F++  +yp+ +++ eLA+++gL+ +q   WF N+R ++
  Cucsa.196810.1  65 FHSqWPYPTDTDKVELAESTGLNRKQLNSWFINHRKRH 102
                     554479*****************************986 PP

2ELK421.9e-142243122
             ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                    ELK++LlrKY+g+++sLkqEFs
  Cucsa.196810.1 22 ELKERLLRKYGGHISSLKQEFS 43
                    9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037893.4E-112243IPR005539ELK domain
SMARTSM011881.2E-72243IPR005539ELK domain
PROSITE profilePS5121311.2262242IPR005539ELK domain
PROSITE profilePS5007111.82342105IPR001356Homeobox domain
SuperFamilySSF466898.39E-1744112IPR009057Homeodomain-like
SMARTSM003898.3E-945109IPR001356Homeobox domain
CDDcd000861.29E-1046104No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2447105IPR009057Homeodomain-like
PfamPF059203.2E-1562101IPR008422Homeobox KN domain
PROSITE patternPS00027080103IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
NEAASEEDIS ARGEVAGNKD GELKERLLRK YGGHISSLKQ EFSKTKKKEG LPKEAKQILL  60
NWWNFHSQWP YPTDTDKVEL AESTGLNRKQ LNSWFINHRK RHWKLPSENM LSLRGSLDHE  120
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6854059e-72LN685405.1 Cucumis melo genomic scaffold, unassembled_sequence32904.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138104.19e-84PREDICTED: homeobox protein knotted-1-like 2 isoform X2
RefseqXP_011656609.18e-84PREDICTED: homeobox protein knotted-1-like 2 isoform X1
SwissprotP466407e-41KNAT2_ARATH; Homeobox protein knotted-1-like 2
TrEMBLA0A0A0LU961e-83A0A0A0LU96_CUCSA; Uncharacterized protein
STRINGAT1G70510.12e-38(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.14e-42KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]